Reading Diary 5

5 null terms

consent

Permission to do something, especially given by somebody in authority.

Example: All participants were enrolled under REB approved protocols and provided written informed consent. N. N. Kinloch et al., “Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity,” Journal of Virology, vol. 93, no. 1, Jan. 2019, doi: 10.1128/jvi.01502-18.

en: согласие, разрешение, соглашение

to comprise

To have somebody/something as parts or members.

Example: Participants comprised a subset of the 513 individuals originally recruited to two established Ugandan HIV treatment cohorts, the Adherence Monitoring Uganda (AMU) cohort and the Uganda AIDS Rural Treatment Outcomes (UARTO) cohort (46-48). N. N. Kinloch et al., “Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity,” Journal of Virology, vol. 93, no. 1, Jan. 2019, doi: 10.1128/jvi.01502-18.

en: включать, составлять, содержать

to deem

To have a particular opinion about somebody/something.

Example: The FDR is the expected proportion of false positives among results deemed significant at a given p-value threshold (e.g. at a q ≤ 0.2, we expect 20% of identified associations to be false positives). N. N. Kinloch et al., “Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity,” Journal of Virology, vol. 93, no. 1, Jan. 2019, doi: 10.1128/jvi.01502-18.

en: считать, счесть, посчитать

to infer

To reach an opinion or decide that something is true on the basis of information that is available.

Example: P-values are computed using the likelihood ratio test and q<0.2 was used to define statistical significance, as in previous studies (7-9, 12, 13, 45). HLA-associated polymorphisms were grouped into two categories: adapted (inferred escaped) forms, which represent HIV amino acids significantly overrepresented in the presence of the HLA allele and nonadapted (inferred susceptible) forms, which represent HIV amino acids significantly underrepresented in the presence of the allele in question. N. N. Kinloch et al., “Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity,” Journal of Virology, vol. 93, no. 1, Jan. 2019, doi: 10.1128/jvi.01502-18.

en: делать вывод, заключать, подразумевать

to strip out

To make clean from something.

Example: To preserve universal HIV codon numbering conventions, the HIV subtype B reference strain HXB2 sequence was added to each HIV dataset, aligned as above, and all columns where HXB2 was gapped were stripped out. N. N. Kinloch et al., “Genotypic and Mechanistic Characterization of Subtype-Specific HIV Adaptation to Host Cellular Immunity,” Journal of Virology, vol. 93, no. 1, Jan. 2019, doi: 10.1128/jvi.01502-18.

en: вычистить, выпотрошить